Simply Statistics A statistics blog by Rafa Irizarry, Roger Peng, and Jeff Leek

The Statistics Identity Crisis: Am I a Data Scientist

The joint ASA/Simply Statistics webinar on the statistics identity crisis is now live!

Faculty/postdoc job opportunities in genomics across Johns Hopkins

It’s pretty exciting to be in genomics at Hopkins right now with three new Bloomberg professors in genomics areas, a ton of stellar junior faculty, and a really fun group of students/postdocs. If you want to get in on the action here is a non-comprehensive list of great opportunities.

Faculty Jobs

Job: Multiple tenure track faculty positions in all areas including in genomics

Department:  Biostatistics

To apply: http://www.jhsph.edu/departments/biostatistics/_docs/faculty-ad-2016-combined-large-final.pdf

Deadline: Review ongoing

Job: Tenure track position in data intensive biology

Department:  Biology

To applyhttp://apply.interfolio.com/31146

Deadline: Nov 1st and ongoing

Job: Tenure track positions in bioinformatics, with focus on proteomics or sequencing data analysis

Department:  Oncology Biostatistics

To applyhttps://www.research-it.onc.jhmi.edu/DBB/PhD_Statistician.pdf

Deadline: Review ongoing

 

Postdoc Jobs

Job: Postdoc(s) in statistical methods/software development for RNA-seq

Employer:  Jeff Leek

To apply: email Jeff (http://jtleek.com/jobs/)

Deadline: Review ongoing

Job: Data scientist for integrative genomics in the human brain (MS/PhD)

Employer:  Andrew Jaffe

To apply: email Andrew (http://www.aejaffe.com/jobs.html)

Deadline: Review ongoing

Job: Research associate for genomic data processing and analysis (BA+)

Employer:  Andrew Jaffe

To apply: email Andrew (http://www.aejaffe.com/jobs.html)

Deadline: Review ongoing

Job: PhD developing scalable software and algorithms for analyzing sequencing data

Employer:  Ben Langmead

To apply:  http://www.cs.jhu.edu/graduate-studies/phd-program/

Deadline: See site

Job: Postdoctoral researcher developing scalable software and algorithms for analyzing sequencing data

Employer:  Ben Langmead

To apply:  email Ben (http://www.langmead-lab.org/open-positions/)

Deadline: Review ongoing

Job: Postdoctoral researcher developing algorithms for challenging problems in large-scale genomics whole-genome assenbly, RNA-seq analysis, and microbiome analysis

Employer:  Steven Salzberg

To apply:  email Steven (http://salzberg-lab.org/)

Deadline: Review ongoing

Job: Research associate for genomic data processing and analysis (BA+) in cancer

Employer:  Luigi Marchionni (with Don Geman)

To apply:  email Luigi (http://luigimarchionni.org/)

Deadline: Review ongoing

Job: Postdoctoral researcher developing algorithms for biomarkers development and precision medicine application in cancer

Employer:  Luigi Marchionni (with Don Geman)

To apply:  email Luigi (http://luigimarchionni.org/)

Deadline: Review ongoing

Job:Postdoctoral researcher developing methods in machine learning, genomics, and regulatory variation

Employer:  Alexis Battle

To apply:  email Alexis (http://battlelab.jhu.edu/join_us.html)

Deadline: Review ongoing

Job: Postdoctoral fellow with interests in biomarker discovery for Alzheimer’s disease

Employer:  Madhav Thambisetty / Ingo Ruczinski

To apply:  http://www.alzforum.org/jobs/postdoctoral-research-fellow-alzheimers-disease-biomarkers

Deadline: Review ongoing

Job: Postdoctoral positions for research in the interface of statistical genetics, precision medicine and big data

Employer:  Nilanjan Chatterjee

To apply:  http://www.jhsph.edu/departments/biostatistics/_docs/postdoc-ad-chatterjee.pdf

Deadline: Review ongoing

Job: Postdoctoral research developing algorithms and software for time course pattern detection in genomics data

Employer:  Elana Fertig

To apply:  email Elana (ejfertig@jhmi.edu)

Deadline: Review ongoing

Job: Postdoctoral fellow to develop novel methods for large-scale DNA and RNA sequence analysis related to human and/or plant genetics, such as developing methods for discovering structural variations in cancer or for assembling and analyzing large complex plant genomes.

Employer:  Mike Schatz

To apply:  email Mike (http://schatzlab.cshl.edu/apply/)

Deadline: Review ongoing

Students

We are all always on the hunt for good Ph.D. students. At Hopkins students are admitted to specific departments. So if you find a faculty member you want to work with, you can apply to their department. Here are the application details for the various departments admitting students to work on genomics: https://ccb.jhu.edu/students.shtml

 

 

 

The statistics identity crisis: am I really a data scientist?

 

 

 

crisis

 

Tl;dr: We will host a Google Hangout of our popular JSM session October 30th 2-4 PM EST. 

 

I organized a session at JSM 2015 called “The statistics identity crisis: am I really a data scientist?” The session turned out to be pretty popular:

but it turns out not everyone fit in the room:

Thankfully, Steve Pierson at the ASA had the awesome idea to re-run the session for people who couldn’t be there. So we will be hosting a Google Hangout with the following talks:

'Am I a Data Scientist?': The Applied Statistics Student's Identity CrisisAlyssa Frazee, Stripe
How Industry Views Data Science Education in Statistics DepartmentsChris Volinsky, AT&T
Evaluating Data Science Contributions in Teaching and ResearchLance Waller, Emory University
Teach Data Science and They Will ComeJennifer Bryan, The University of British Columbia

You can watch it on Youtube or Google Plus. Here is the link:

https://plus.google.com/events/chuviltukohj2inbqueap9h7228

The session will be held October 30th (tomorrow!) from 2-4PM EST. You can watch it live and discuss the talks using the hashtag [ 

 

 

crisis

 

Tl;dr: We will host a Google Hangout of our popular JSM session October 30th 2-4 PM EST. 

 

I organized a session at JSM 2015 called “The statistics identity crisis: am I really a data scientist?” The session turned out to be pretty popular:

but it turns out not everyone fit in the room:

Thankfully, Steve Pierson at the ASA had the awesome idea to re-run the session for people who couldn’t be there. So we will be hosting a Google Hangout with the following talks:

'Am I a Data Scientist?': The Applied Statistics Student's Identity CrisisAlyssa Frazee, Stripe
How Industry Views Data Science Education in Statistics DepartmentsChris Volinsky, AT&T
Evaluating Data Science Contributions in Teaching and ResearchLance Waller, Emory University
Teach Data Science and They Will ComeJennifer Bryan, The University of British Columbia

You can watch it on Youtube or Google Plus. Here is the link:

https://plus.google.com/events/chuviltukohj2inbqueap9h7228

The session will be held October 30th (tomorrow!) from 2-4PM EST. You can watch it live and discuss the talks using the hashtag](https://twitter.com/search?q=%23jsm2015) or you can watch later as the video will remain on Youtube.

Discussion of the Theranos Controversy with Elizabeth Matsui

Theranos is a Silicon Valley diagnostic testing company that has been in the news recently. The story of Theranos has fascinated me because I think it represents a perfect collision of the tech startup culture and the health care culture and how combining them together can generate unique problems.

I talked with Elizabeth Matsui, a Professor of Pediatrics in the Division of Allergy and Immunology here at Johns Hopkins, to discuss Theranos, the realities of diagnostic testing, and the unique challenges that a health-tech startup faces with respect to doing good science and building products people want to buy.

Notes:

Not So Standard Deviations: Episode 3 - Gilmore Girls

I just uploaded Episode 3 of Not So Standard Deviations so check your feeds. In this episode Hilary and I talk about our jobs and the life of the data scientist in both academia and the tech industry. It turns out that they’re not as different as I would have thought.

Download the audio file for this episode.